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Environment and human health
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Recommended: Environment and human health
We live in an environment full of microorganisms. These organisms may be pathogenic causing serious infections to humans and other living organisms, some just commensals while others are helpful in the food industry. The harmful effect of these organisms is a function of the condition that surrounds them at a particular time. For example, a favorable temperature, and the acidity or alkalinity of the medium in which they find themselves are some of the key factors that helps them multiply well enough to cause infection. It is a bit difficult to find a solution to a problem without knowing its causes. Therefore, it necessary that to identify the problems caused by bacteria, we need to know what actually caused it. Identifying the unknown bacteria …show more content…
A pure culture of an unknown bacterium labeled # 10B test tube was handed to me by my instructor. A gram-staining kit, bibulous paper, a light microscope, inoculating needle, and API 20E system were also used.
A slide was prepared with the unknown bacteria and the Gram stain using crystal violet and safranin as the reagent, iodine as the mordant, and alcohol as the decolorizing agent. This procedure was performed to identify the gram reaction, morphology and the arrangement of the unknown bacteria. A gram negative rod with random arrangement was seen under the light microscope after the gram stain.
To further determine the species of the unknown bacteria, an API 20E was used. API 20E system utilized a plastic strip with 20 separate compartments with each compartment consisting of cupule or a depression and a small tube containing a specific dehydrated medium (1). The ONPG tube consisted of an ingredient that functioned as an internal indicator. The ADH, LDC, ODC and URE tubes contain phenol red as the indicator. The CIT, GLU, MAN, INO, SOR, RHA, SAC, MEL, AMY and ARA tubes contain bromthymol blue as an indicator. The GEL tube contains charcoal and the H2S tube contains iron salts as indicators. The TDA, IND and VP tubes contain no indicator. All the tubes contain buffers and all the tubes with the exception of the CIT and URE contain
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With the exception of ODC, H2S, URE, ADH, and IDC which were slightly under-filled with the bacteria suspension and completely filled with a sterile mineral oil to provide anaerobic conditions in the chamber, the rest of the cupule were completely filled with the bacteria suspension. The suspension was infused into the tube medium through the cupule, resulting in the reconstitution of the dehydrated medium by the saline. The reconstituted medium was inoculated at 37 degree centigrade. The result was recorded after 18 – 24hours.
A test reagent of Baritts 1 and Baritts 2 were added to the VP compartment and the result was recorded after ten minutes. A drop of Kovacs was added to indole, and ferric chloride was also added to TDA. The result was subsequently recorded. Concurrent with the API test, a motility test was also performed with the unknown bacteria. The motility test was carried out using an aseptic technique where a needle was used to inoculate a motility agar with the unknown bacteria.
Results
The bacteria in question had a white transparent colony. It was found to be a gram negative rod with a positive motility test. The API 20E result was read as either negative or positive depending on the color they produced in the individual tube.
The table below gives the test
I identified the genus and species of an unknown bacterial culture, #16, and I applied the following knowledge of morphologic, cultural and metabolic characteristics of the unknown microorganism according to the laboratory manual as well as my class notes and power point print outs. I was given an incubated agar slant labeled #16 and a rack of different tests to either examine or perform myself; the tests are as follows: Gram Stain; Nutrient Gelatin Test; Carbohydrate Fermentation; Dextrose, Lactose and Sucrose; IMVIC tests; Citrate, Indole, Mythel-Red and Vogues Proskauer test; as well as a Urease and TSI Test. Materials and Methods/Results Upon receiving the Microorganism (M.O.) #16, I prepared a slide by cleaning and drying it. Then, using a bottle of water I placed a sterile drop of water on the slide and used an inoculating loop, flame sterilized, I took a small sample of the unknown growth in my agar slant and smeared it onto the slide in a dime sized circle and then heat fixed it for ten minutes.
Each test that was used in the lab for the unknown bacteria had been performed on many different bacteria and shown that each test has different results depending on the bacteria given. The first test, the Gram stain, confirmed that the unknown bacterium was a gram negative bacilli. After performing the remainder of the tests and comparing them to the twelve negative bacteria that it could be out of it was basically a process of elimination. Basically looking at all the results and seeing which tests separated positive verses negative results the most. After reviewing all of the tests the first test that stuck out besides the gram stain was the lactose fermentation, followed by the citrate utilization test and then by the indole test. The lactose fermentation test eliminated seven of the 12 bacteria. From the five bacteria left the citrate utilization test eliminated who more of the bacteria, and last the indole test eliminated two of the three bacteria left leaving only one bacterium left. After comparing the results to the results of the 12 tests and separating which tests were positive and negative for each it was obvious that the bacteria had to be Shigella
The isolate possesses some enzymes required for hydrolytic reactions. Hydrolytic enzymes found to be secreted from the bacterium, are -amylase, casein, and PYRase. In the starch hydrolysis and casein tests, there was a zone of clearing around the bacterium, which was indicative of the secreted enzymes necessary to break down starch and casein. In the PYR test, the presence of PYRase was detected by a color change to red on the PYR disc after the addition of the PYR reagent (p-dimethylaminocinnamaldehyde). Hydrolytic enzymes for which the EI tested negative were urease, gelatinase, and DNAse. In the Urea Hydrolysis test, it was observed that the urea broth did not have a color change, indicating that there was no urease secreted to break down urea in the broth. Similarly, there was no gelatinase present to break down gelatin in the Gelatin Hydrolysis test, so the nutrient gelatin remained solid. It was concluded that the EI does not possess DNase because there was no clearing zone around the bacteria, indicating that DNA had not been
After 48 hours of incubation the agar plates were viewed. Individual colonies were tested for successful isolation by gram staining and then viewing the stained bacteria under a microscope. Isolation was successful. One colony of each unknown bacteria was transferred to an agar slant for growth. The agar slants were stored at room temperature over the weekend so that they would not grow too much.
Streak plate technique was used to isolate pure culture for each bacteria (2). The Gram stain was used to determine Gram reaction and morphology of each bacteria (2) Selective and differential media such as, salt agar, MacConkey agar and blood agar were used for bacterial identification (2). Gelatin deeps were inoculated to detect production of gelatinase (2). Starch Agar plate were inoculated to detect amylase (2). Ocular reticle used to determine bacteria size (2). Motility deeps were inoculated to detect motility on bacteria (2). Thioglycollate broth used to determine oxygen requirements (2). Carbohydrate fermentation
The purpose of this study is to identify an unknown bacterium from a mixed culture, by conducting different biochemical tests. Bacteria are an integral part of our ecosystem. They can be found anywhere and identifying them becomes crucial to understanding their characteristics and their effects on other living things, especially humans. Biochemical testing helps us identify the microorganism present with great accuracy. The tests used in this experiment are rudimentary but are fundamental starting points for tests used in medical labs and helps students attain a better understanding of how tests are conducted in a real lab setting. The first step in this process is to use gram-staining technique to narrow down the unknown bacteria into one of the two big domains; gram-negative and gram-positive. Once the gram type is identified, biochemical tests are conducted to narrow down the specific bacterial species. These biochemical tests are process of elimination that relies on the bacteria’s ability to breakdown certain kinds of food sources, their respiratory abilities and other biochemical conditions found in nature.
The results of the gram stain test were cocci and purple. This indicated that the unknown bacteria were gram positive. The gram stain test eliminated Escherichia coli, Klebsiella pneumonia, Salmonella enterica, and Yersinia enterocolitica as choices because these bacteria are gram negative. Next a Blood Agar plate was used because in order to do a MSA or a Catalase test there needs to be a colony of the bacteria. The result of the Blood Agar plate was nonhemolytic.
The purpose of this laboratory is to learn about cultural, morphological, and biochemical characteristics that are used in identifying bacterial isolates. Besides identifying the unknown culture, students also gain an understanding of the process of identification and the techniques and theory behind the process. Experiments such as gram stain, negative stain, endospore and other important tests in identifying unknown bacteria are performed. Various chemical tests were done and the results were carefully determined to identify the unknown bacteria. First session of lab started of by the selection of an unknown bacterium then inoculations of 2 tryptic soy gar (TSA) slants, 1 nutrient broth (TSB), 1 nutrient gelatin deep, 1 motility
In the last decade, the number of prescriptions for antibiotics has increases. Even though, antibiotics are helpful, an excess amount of antibiotics can be dangerous. Quite often antibiotics are wrongly prescribed to cure viruses when they are meant to target bacteria. Antibiotics are a type of medicine that is prone to kill microorganisms, or bacteria. By examining the PBS documentary Hunting the Nightmare Bacteria and the article “U.S. government taps GlaxoSmithKline for New Antibiotics” by Ben Hirschler as well as a few other articles can help depict the problem that is of doctors prescribing antibiotics wrongly or excessively, which can led to becoming harmful to the body.
The purpose of this project was to identify unknown bacteria species from a mixed culture. The two unknown species were initially plated onto Tryptic Soy Agar (TSA), Eosin Methylene Blue (EMB), Mannitol Salt Agar (MSA), and blood agar plates to distinguish between the two different bacteria using colony size, color, shape, and growth characteristics. By identifying and inoculating the differing types of colonies, the two unknown bacteria were purified and able to be tested
Over the years humans have tried every possibility to overcome the health problems, spread of epidemics and infections, disease control and have worked towards a healthy society free of disease and health problems. They have succeeded to a great extent. The book “Good germs, bad germs” describes that though the life expectancy is now far more as it was in previous eras. Epidemic problems and infectious diseases are now getting lesser and lesser and humans are being treated successfully. The hygienic conditions have also been improved so as to ensure least growth of microbes, germs, parasites and bacteria. Antibiotics have been invented to address diseases and infections caused by bacteria and viruses. With all these substantial efforts the biologists, physicians and scientists have triggered another epidemic which is even more severe. They have killed those microbes and bacterial species which were human friendly and as a result of either their disruption or mutation, pathogenic bacteria have even become more active and resistant to treatments. This has led to increased ineffectiveness of antibiotic drugs, low immunity and various infections and inflammatory diseases. The chlorinated water for drinking and food processing along with excessive hygienic conditions indicates our fight against these bacteria and germs. Further, these antibiotics are even given to the livestock which becomes our food and as result many of their resistant germs end up in our digestive tract and other organs. Thus, the war against microbes through excessive cleanliness and use of antibiotics has resulted in antibiotic resistance among humans, which has become one of the prominent problems of medical science
Bacterial cells, like plant cells, are surrounded by a cell wall. However, bacterial cell walls are made up of polysaccharide chains linked to amino acids, while plant cell walls are made up of cellulose, which contains no amino acids. Many bacteria secrete a slimy capsule around the outside of the cell wall. The capsule provides additional protection for the cell. Many of the bacteria that cause diseases in animals are surrounded by a capsule. The capsule prevents the white blood cells and antibodies from destroying the invading bacterium. Inside the capsule and the cell wall is the cell membrane. In aerobic bacteria, the reactions of cellular respiration take place on fingerlike infoldings of the cell membrane. Ribosomes are scattered throughout the cytoplasm, and the DNA is generally found in the center of the cell. Many bacilli and spirilla have flagella, which are used for locomotion in water. A few types of bacteria that lack flagella move by gliding on a surface. However, the mechanism of this gliding motion is unknown. Most bacteria are aerobic, they require free oxygen to carry on cellular respiration. Some bacteria, called facultatibe anaerobes can live in either the presence or absence of free oxygen. They obtain energy either by aerobic respiration when oxygen is present or by fermentation when oxygen is absent. Still other bacteria cannot live in the presence of oxygen. These are called obligate anaerobes. Such bacteria obtain energy only fermentation. Through fermentation, different groups of bacteria produce a wide variety of organic compounds. Besides ethyl alcohol and lactic acid, bacterial fermentation can produce acetic acid, acetone, butyl alcohol, glycol, butyric acid, propionic acid, and methane, the main component of natural gas. Most bacteria are heterotrophic bacteria are either saprophytes or parasites. Saprophytes feed on the remains of dead plants and animals, and ordinarily do not cause disease. They release digestive enzymes onto the organic matter. The enzymes breakdown the large food molecules into smaller molecules, which are absorbed by the bacterial cells. Parasites live on or in living organisms, and may cause disease. A few types of bacteria are Autotrophic, they can synthesize the organic nutrients they require from inorganic substances. Autotrophic bacteria are either photosynthetic or Chemosynthetic. The photosynthetic bacteria contain chlorophyll that are different from the plant chlorophyll. In bacterial photosynthesis, hydrogen is obtained by the splitting of compounds other than water.
Leboffe, M. J., & Pierce, B. E. (2010). Microbiology: Laboratory Theory and Application, Third Edition 3rd Edition (3rd Ed.). Morton Publishing
Microbes are everywhere in the biosphere, and their presence invariably affects the environment in which they grow. The effects
Food borne illnesses are caused by consuming contaminated foods or beverages. There are many different disease-causing microbes, or pathogens. In addition, poisonous chemicals, or other harmful substances can cause food borne illnesses if they are present in food. More than two hundred and fifty different food borne illnesses have been described; almost all of these illnesses are infections. They are caused by a variety of bacteria, viruses, and parasites that can be food borne. (Center 1)