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Glycolysis study
Introduction cell death
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The expression of lac operon in each tube equals the amount of beta-galactosidase produced. Therefore, by looking at the amount of beta-galactosidase under different conditions collectively is a good way to understand the function of inducers and repressors in supervising the expression of lac operon and the control of gene expression generally.
At the given time sets, CTAB was added to the tubes to kill the E. coli cells and lyse the cells to release its contents including galactosidase enzyme.
We can measure the amount of beta galactosidase produced in each tubes indirectly although it is difficult. ONPG is converted to galactose and o-nitrophenol by beta-galactosidase which has a yellow color with an absorbance at 414nm. The amount of ONPG
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converted to galactose and nitrophenol by beta-galactosidase is represented by the absorbance reading in each tube. Knowing that, we can then determine the amount of beta-galactosidase enzyme produced in each tubes. For example, the lower the absorbance reading, the lesser the amount of beta galactosidase produced. In turn we can investigate the lax operon expression rate in E.coli in the presence of inducer, repressors and effectors. Figure 1 shows the amount of beta-galactosidase produced in E.
coli after addition of inducer IPTG at different times. We can see from the graph that it does not cut the X axis at time 0. This is due to the fact that the lac operon was not induced by IPTG due to lack of time. The graph cuts the X axis at roughly 1 and a half minutes after adding IPTG. This indicates the time where lac operon was first induced because there was beta-galactosidase produced. From here we can deduce that production of beta-galactosidase does not take place immediately after adding IPTG but rather takes a while for all the expression staged to be passed by lac operon in order to produce beta galactosidase. From the graph we can see that for the control no beta galactosidase was produced. This is because the control contains water and the repressor was allowed to bind to the operator, causing the transcription process to initiate due to RNA polymerase II not binding to the operator. There is a positive linear relationship between the time of induction with IPTG and the amount of beta-galactosidase production in the tubes. IPTG acts as an inducer, stopping the repressor protein to bind to the operator region by binding to the repressor protein, This causes the lac operon to be
expressed. From Figure 2 we can see that the amount of beta-galactosidase produced in the tube where lactose is added was quite low. When lactose is present in the tube, it is converted into products namely glucose and allolactose by beta-galactosidase. Allolactose functions similarly to IPTG and binds to the repressor, stopping it from binding to the operator region for lac operon to be expressed. However, allolactose is easily hydrolysed hence it does not induce as much compared to IPTG, causing the graph to appear flatter. Under the presence of glucose, the graph appeared flat at first but increase a little as time went on. E.coli cells does not prefer lactose as a source of energy. If glucose is present, the cell will use up all the glucose before expression of lac operon. A second level of gene expression control exists to prevent lactose metabolism. Promoter of lac operon contains 2 binding sites, Rna polymerase binds to one while catabolite activator protein(CAP) and cycle AMP binds to another. In order for transcription of lac operon, CAP-cAMP complex has to bind to the promoter site. This complex is only present when glucose is available inside the bacterial cell. When there is low amount of glucose in the cell, the amount of cAMP increases and vice versa. But after cAMP level decreases, CAP+RNA Polymerase II complex inactivates. This causes the promoter to inactivate and shutting off of lac operon. As we can see for both glucose tubes, lac operon was repressed at first but after the glucose is used up lac operon can start to be expressed again. Moving on to chloramphenicol tube, when it was added in after 10mins, the rate of production for beta galactosidase remained almost constant due to the fact that chloramphenicol is an antibiotic which inhibits bacterial ribosome peptidyl transferase activity blocking the elongation of polypeptide chains which is the beta-galactosidase enzyme. Rifampicin also acts in a similar way where it inhibits DNA-dependant RNA polymerase in bacterial cells by binding to its beta subunit, preventing DNA transcription and protein synthesis. Streptomycin is also an antibiotic which inhibits protein synthesis. It works by binding to the 30S subunit of the bacterial ribosome, disturbing the binding of tRNA to the 30S subunit. This prevents translation of lac operon mRNA in E.coli and hence beta galactosidase is not produced. These 3 antibiotics keep the amount of beta galactosidase produced the same as before they were added by blocking the expression of lac operon. From these results, we can see that production of beta galactosidase is controlled by the expression of lac operon.
...et light. If the LAA plate glows green under exposure to ultraviolet light, then we can conclude that our unknown insert piece of DNA would be the kan gene. If it does not glow green under exposure to ultraviolet light, then then we streak the colony from our LAA plate onto the LAC plate using a sterile glass spreader. When the LAC plate is dray, we place it upside down in the microfuge rack so that it can be incubated at 37 ºC. Incubation at 37 ºC will allow the transformed bacterial cells to grow. If we see bacterial growth on the LA plate containing chloramphenicol, we can conclude that our unknown insert piece of DNA would be the cat gene, since the cat gene is resistant to chloramphenicol. Afterwards, we then grab the microfuge tube labeled NP and repeat the aforementioned steps shown above pertaining to the LA plates. This would be considered our control.
Living organisms undergo chemical reactions with the help of unique proteins known as enzymes. Enzymes significantly assist in these processes by accelerating the rate of reaction in order to maintain life in the organism. Without enzymes, an organism would not be able to survive as long, because its chemical reactions would be too slow to prolong life. The properties and functions of enzymes during chemical reactions can help analyze the activity of the specific enzyme catalase, which can be found in bovine liver and yeast. Our hypothesis regarding enzyme activity is that the aspects of biology and environmental factors contribute to the different enzyme activities between bovine liver and yeast.
For example, if a person had been able to consume lactose products for their life with no problems, but in an unfortunate event had to have a portion of his or her small intestine removed, there would be a change in the number of present lactase enzymes in the stomach. Because the lactase enzyme is stored in the small intestine, the person may now experience lactose intolerance due to the decrease in the presence of lactase. Knowing where the lactase enzyme is stored can aid physicians in understanding what will happen after a procedure or the introduction of a new medication. The experiment was conducted to determine the optimal ph of lactose required to produce the maximum amount of glucose. It was predicted that the optimal ph of lactose would be most efficient at lactose ph 6, and that the lower the ph, the amount of glucose produced would increase
The affects of pH, temperature, and salt concentration on the enzyme lactase were all expected to have an effect on enzymatic activity, compared to an untreated 25oC control. The reactions incubated at 37oC were hypothesized to increase the enzymatic activity, because it is normal human body temperature. This hypothesis was supported by the results. The reaction incubated to 60oC was expected to decrease the enzymatic activity, because it is much higher than normal body temperature, however this hypothesis was not supported. When incubated to 0oC, the reaction rate was hypothesized to decrease, and according to the results the hypothesis was supported. Both in low and high pH, the reaction rate was hypothesized to decrease, which was also supported by the results. Lastly, the reaction rate was hypothesized to decrease in a higher salt concentration, which was also supported by the results.
The control for both curves was the beaker with 0% concentration of substrate, which produced no enzyme activity, as there were no substrate molecules for...
completed, the tubes are stored at 4°C until analysis of the tubes. To alylize the PCR results with
In this experiment the heat shock method will be used to deliver a vector (plasmid) of GFP to transform and grow E. coli bacteria. Four plates containing Luria Bertani (LB) broth and either –pGLO and +pGLO will have E. coli bacteria added to it. The plate containing –pGLO (no pGLO) and LB will show growth as ampicillin will be present killing bacteria but no glowing because no arabinose will be present for glowing to be activated, the same result will be seen in the plate containing +pGLO, LB and ampicillin. The plate with –pGLO, LB and ampicillin will show no growth and no glowing as no arabinose is present for glowing to be activated
The purpose of this experiment was to discover the specificity of the enzyme lactase to a spec...
It has an outer membrane that contains lipopolysaccharides, a periplasmic space with a peptidoglycan layer, and an inner cytoplasmic membrane. It also consists of adhesive fimbriae. Some strains of E. coli are piliated and are capable of accepting, as well as transferring plasmid to and from other bacteria. This enables the bacteria under stressful or bad conditions to survive. Although its structure is simple with only one chromosomal DNA and a plasmid, it can perform complicated metabolism to help maintain its cell division and cell growth. E. coli produce very rapidly; a single microscopic cell can divide to form a visible colony with millions of cells overnight (phschool.com). It is the preferred bacteria in most laboratories because it grows fast and easy, and can obtain energy from a wide variety of sources. Since the birth of molecular cloning, E. coli has been used as a host for introduced DNA sequences (biotechlearn.org.nz). In 1973, Boyer and Cohen showed that two short pieces of DNA could be cut and pasted together, and returned to
Purpose: The purpose of this lab is to explore the different factors which effect enzyme activity and the rates of reaction, such as particle size and temperature.
In biology class, we were learning about enzymes. Enzymes are proteins that help catalyze chemical reactions in our bodies. In the lab, we were testing the relationship between the enzyme catalase and the rate of a chemical reaction. We predicted that if there was a higher percentage of enzyme concentration, then the rate of chemical reaction would increase or it would take less time. We placed 1 ml of hydrogen peroxide into four depressions. Underneath the first depression, we place 1 ml of 100% catalase and make 50% dilution with 0.5 ml of water. We take 50% of that solution and dilute with 0.5 ml of water and we repeat it two more times. there were four depressions filled with catalase: 100%, 50%, 25% , 12.5 % with the last three diluted
Nuclease is one of the acknowledged proteins secreted by members of the genus Lactobacillus. After several evidences of extracellular DNAse activity, nucleases from several Lactobacillus species have been identified by two methods; sodium dodecyl sulfate polyacrylamide gel electrophoresis, coupled to in-gel protein renaturalization and nuclease assay [28]. It has been shown that nuclease activity over the DNA present in the luminal content, can lead to the formation of a set of diverse oligonucleotides, some of them with immunomodulatory properties [29, 30, 31].
Madar, Sylvia S., & Windelspecht, Michael. (2014). Inquiry into Life, Metabolism: Energy & Enzymes (pp. 104-107). New York: McGraw Hill.
Lactose intolerance is an inherited condition as indicated by a recently distributed survey, as well as complied research that has been collected. The survey results had only a small fraction of people who were lactose intolerant, 10%. However, almost 50% of survey takers family members had intolerance toward lactose. This proves several people are not born with the lactose intolerance activated but eventually with age the trait will activate since it has been inherited. Also majority of the survey takers are North American or European and in high school. Ethnicity, culture and age all have a large impact on whether or not the lactase enzyme is being produce, specifically in mammals.
Enzymes are necessary for life to exist the way it does. Enzymes help our bodies carry out chemical reactions at the correct speed. Catalase is one such enzyme, “Catalase is a common enzyme found in nearly all living organisms exposed to oxygen (such as bacteria, plants, and animals). It catalyzes the decomposition of hydrogen peroxide to water and oxygen”.\(Wikipedia). In other words catalase speeds up the breaking down of hydrogen peroxide, which is a byproduct of reactions in our body. Hydrogen peroxide is very common in our body but, “If it were allowed to build up it would kill us”(Matthey).This shows how necessary enzymes such as catalase to life. Without enzymes reactions that take place in our body could be affected greatly. In our