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Prokaryotic vs eukaryotic
Difference of prokaryotes and eukaryotes
Difference in prokaryotes to eukaryotes
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Introduction Bioinformatics based tools are essential to the design of experiments in the post-genomic age. They allow scientists to manipulate the large datasets gained from genome sequencing efforts to identify potential research targets; analyse target sequences to predict protein characteristics; and to share annotated data through simple, on demand interfaces. This gives researchers more information to use when creating a hypothesis, which saves time and money that would have been spent of failed experiments. Informed use of these tools is required to avoid false-positive and negative results. This requires knowledge of the tools limits, parameter adjustments and biological considerations to ensure a confident hypothesis when using bioinformatics. Additionally, strong fundamental knowledge of these techniques will increase their accuracy and efficiency, leading to better initial experiments. An important biological consideration that dictates which bioinformatics tools should be used is whether sequence data is taken from a prokaryotic or eukaryotic organism. Many tools will have options to select what classification your sequence comes from and some will only work with a certain classification. This is because there are major differences in the organisation and processing of genetic information between prokaryotes and eukaryotes. However, only certain differences between the two classifications are important; depending on what data you’re analysing and what information you hope to extract. This creates two stages of analysis take that place during experimental design using bioinformatics tools. These are gene finding and gene function prediction; together, they can identify potential targets for research and elicit imp... ... middle of paper ... ...d to consider these differences when identifying genes and predicting their function. Prokaryotic genomes also possess synteny, which makes comparative genomics a useful tool in identifying small genes that would be overlooked in more stringent gene finding tools such as ORF scanning. Predicting gene function revolves around predicting protein localisation and defining conserved functional domains. These are both dependant on whether the target sequence is prokaryotic or eukaryotic in origin, as different signalling peptides, possibilities for localisation and useful domains exist for each classification. However, gene expression data has been overlooked as a method of functional analysis as analysis of either classification follows a similar method. Gene expression data is useful as it further narrows the ambiguity of protein function to specific cellular events.
Using PCR and Gel Electrophoresis to Determine Genotype. In certain situations, it is necessary to identify DNA retrieved from a sample. When there is a small sample in need of identification, Polymerase Chain Reactions are used to multiply the DNA. in the sample in many identical samples.
Phenotypic methods of classifying microorganisms describe the diversity of bacterial species by naming and grouping organisms based on similarities. The differences between Bacteria, Archaea and Eukaryotes are basic. Bacteria can function and reproduce as single cells but often combine into multicellular colonies. Bacteria are also surrounded by a cell wall. Archaea differ from bacteria in their genetics and biochemistry. Their cell membranes are made with different material than bacteria. Just like bacteria, archaea are also single cell and are surrounded by a cell wall. Eukaryotes, unlike bacteria and archaea, contain a nucleus. And like bacteria and archaea, eukaryotes have a cell wall. The Gram stain is a system used to characterize bacteria based on the structural characteristics of their cell walls. A Gram-positive cell will stain purple if cell walls are thick and a Gram-negative cell wall appears pink. Most bacteria can be classified as belonging to one of four groups (Gram-positive cocci, Gram-positive bacilli, Gram-negative cocci, and Gram-negative bacilli) (Phenotypic analysis. (n.d.).
"Result Filters." National Center for Biotechnology Information. U.S. National Library of Medicine, n.d. Web. 25 Apr. 2014.
...s project is discovery of new high-penetrance genes as well as finding new low-penetrance gene modifiers of major genes in the human body.
"Polymerase Chain Reaction (PCR) Fact Sheet." National Human Genome Research Institute. 10 Dec. 2007. National Institutes of Health. .
Schulman, Joshua M., and David E. Fisher. "Abstract." National Center for Biotechnology Information. U.S. National Library of Medicine, 28 Aug. 0005. Web. 24 Apr. 2014.
The ultimate goal of pharmacogenomics, as stated by Henig, “would be for everyone’s genome to be analyzed indi...
Proteogenomics is a kind of science field that includes proteomics and genomics. Proteomic consists of protein sequence information and genomic consists of genome sequence information. It is used to annotate whole genome and protein coding genes. Proteomic data provides genome analysis by showing genome annotation and using of peptides that is gained from expressed proteins and it can be used to correct coding regions.Identities of protein coding regions in terms of function and sequence is more important than nucleotide sequences because protein coding genes have more function in a cell than other nucleotide sequences. Genome annotation process includes all experimental and computational stages.These stages can be identification of a gene ,function and structure of a gene and coding region locations.To carry out these processes, ab initio gene prediction methods can be used to predict exon and splice sites. Annotation of protein coding genes is very time consuming process ,therefore gene prediction methods are used for genome annotations. Some web site programs provides these genome annotations such as NCBI and Ensembl. These tools shows sequenced genomes and gives more accurate gene annotations. However, these tools may not explain the presence of a protein. Main idea of proteogenomic methods is to identify peptides in samples by using these tools and also with the help of mass spectrometry.Mass spectrometry searches translation of genome sequences rather than protein database searching. This method also annotate protein protein interactions.MS/MS data searching against translation of genome can determine and identify peptide sequences.Thus genome data can be understood by using genomic and transcriptomic information with this proteogenomic methods and tools. Many of proteomic information can be achieved by gene prediction algorithms, cDNA sequences and comparative genomics. Large proteomic datasets can be gained by peptide mass spectrophotometry for proteogenomics because it uses proteomic data to annotate genome. If there is genome sequence data for an organism or closely related genomes are present,proteogenomic tools can be used. Gained proteogenomic data provides comparing of these data between many related species and shows homology relationships among many species proteins to make annotations with high accuracy.From these studies, proteogenomic data demonstrates frame shifts regions, gene start sites and exon and intron boundaries , alternative splicing sites and its detection , proteolytic sites that is found in proteins, prediction of genes and post translational modification sites for protein.
Gel electrophoresis is used in a variety of settings, particularly in molecular biology. Besides being used to separate nucleic acids, such as DNA and RNA, gel electrophoresis is also employed to divide proteins (Gel Electrophoresis). According to research, electrophoresis is applied for the following reasons, "To get a DNA fingerprint for forensic pur...
Both prokaryotes and protists have negative and positive impacts on humans. Prokaryotes and protists are both used in a variety of ways by humans today. They can affect humans in the way of disease, which can be deadly, but also help humans with environmental issues too. Also, both provide food sources for humans which are beneficial.
Then the sequence was loaded into Velvet where it was trimmed to the desired k-mer length for alignment and contig formation. Mitos and MEGA alignment Explorer were also used in order to get the DNA sequence to a
DNA sequencing is a way of identifying genes based on their DNA sequences. It is important when comparing base sequences of different organisms to determine the relationship between them. Polymerase chain reaction its the process of making several copies of DNA. When picking a sequence of DNA to copy, it is important to choose something universal that way the sequences can be accurately compared. A good choice is the Cytochrome Oxidase Gene found in the mitochondria. It is found in almost all living organisms because COI helps make ATP and living things need energy to live. The sequencing of COI can lead to major leaps in biotechnology in the area of identifying unknown species on a regular and consistent basis.
Distinct characteristics are not only an end result of the DNA sequence but also of the cell’s internal system of expression orchestrated by different proteins and RNAs present at a given time. DNA encodes for many possible characteristics, but different types of RNA aided by specialized proteins sometimes with external signals express the needed genes. Control of gene expression is of vital importance for an eukaryote’s survival such as the ability of switching genes on/off in accordance with the changes in the environment (Campbell and Reece, 2008). Of a cell’s entire genome, only 15% will be expressed, and in multicellular organisms the genes active will vary according to their specialization. (Fletcher, Ivor & Winter, 2007).
By using Messenger RNA- mRNA molecules carrying the code for insulin are common in the cytoplasm of insulin. Or using DNA probes to find the gene required-A probe is a short single strand of DNA carrying the known genetic code we are looking for. So the location of the DNA probe is known, it is labelled with a radioactive fluorescent marker. The aim is for the probe to attach to its complementary base sequence within DNA extracted from human cells.
Since school days the terms like cell, genes, DNA, protein intrigued me a lot and helped me in realizing the dream of pursuing a career in Biotechnology field that has been making many remarkable achievements. The passion towards biological sciences made me to take B.TECH in Biotechnology in Dr. M.G.R. University.