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Experimental design questions
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Introduction
The underlying purpose of the experiments performed in the study, Promoter Hypermethylation of KLF4 Inactivates its Tumor Suppressor Function in Cervical Carcinogenesis, is to investigate the mechanism by which the KLF4 gene is silenced in cervical carcinomas. Cervical cancer accounts for 250,000 female deaths every year. Developing therapies for cervical cancer has been limited due to the lack of genetic and epigenetic data of the mechanism causing the cancer. The KLF4 gene is a transcriptional regulator of cell growth and differentiation. It functions as a tumor suppressor in cervical cancer, but is found to be inactivated in cervical cancer. The overexpression of KLF4 protein is known to inhibit cervical cancer cell growth and tumor formation by activating a cell cycle suppressor. Promoter CpG island hypermethylation can result in transcriptional silencing of many tumor suppressing genes. Two CpG regions, BSQ1 and BSQ3, were examined in this experiment.
Experimental Methods and Results
Cervical cancer tissues and normal cervical tissues were collected from 24 newly diagnosed patients with primary cervical cancer, in order to perform the experiments outlined in the paper. Experiments were also performed on the following human cervical carcinoma cell lines: HeLa, SiHa, C33A, and CaSki, which were purchased from a company. The researchers extracted the genomic DNA from the samples collected. The DNA was then bisulfite modified and amplified using PCR. The PCR product was then examined through gel electrophoresis to insure a single band was obtained, and then sequenced by Invitrogen. Methylation-specific PCR was then carried out of the bisulfate-treated DNA. This was done to check the consistency of the ...
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...rs had tested more cancer cell lines, they may have come to drastically different conclusions. In addition, the experiment drew some drastic conclusions about the mechanism of silencing of KFL4 and how the treatment with 5-Aza affects the cancer cell lines. Maybe other treatments would have the same or even better effects on the cancer cell lines. In order to improve the conclusions of the paper, the researches should have repeated these experiments on a much larger sample. Testing people with different forms and stages of cervical cancer would have been beneficial. Testing people of different heritages could also have an effect on the conclusions drawn from the experiments. Overall, I believe the study did a decent job in researching the mechanism of how the KLF4 gene is silenced in cervical cancer, but a few changes could have been made to improve the study.
We concluded that it is possible to examine small amounts of DNA by first replicating the sample using Polymerase Chain Reactions then using gel electrophoresis to. determine the genotype of the DNA. The main goal for our experiment was to learn how to examine DNA when there is only a small sample present. We examined the samples of DNA obtained from student hair using the replication method of Polymerase Chain Reaction and the inspection method of gel. electrophoresis.
This statistical statement is meant to distract the reader from the real argument, which is how the doctors were taking cervical cancer cells from their patients without their consent. This fallacy hurts Skloot’s credibility because as a reader it seems like she is ignoring one of her main points in her argument, which is the unethical removal of their patient’s cells that doctors were
Hypermethylation of CpG islands at tumor suppressor genes turns them off, while hypomethylation leads to the instability and inappropriate activation of oncogenes and transposable elements. Methylation can be directly related to genetic mutations, an example of this case is methylated cytosine. Methylated cytosine mutates spontaneously in vivo through deamination to give thymine. According to Andy Bannister (n.d.), “37% of somatic p53 mutations and 58% of germ line mutations occur at methylated...
Prostate cancer has been the number one diagnosed cancer today. According to the World Health Organization, approximately one in every ten American men will develop prostate cancer during his lifespan. This cancer has been very common in the last few years. American Cancer Society reported over 200,000 new cases of prostate cancer. Huge number of population suffered severely. The prostate is significant for reproduction. It helps the substances that are involved in fertilization and transporting of sperm as well as survival. Prostate tumor is developed in the prostate gland, which is found in the men’s reproductive system. Prostate is the size of a walnut, which is located inferiorly in the penis and anterior to the rectum. It contains the connective tissue, which includes the glandular and fibrous tissues. This tumor starts to develop during their adolescent year due to the control of the male reproductive hormones. When the tumor starts to develop, it begins at the urethra, which is a tube that releases the urine from the bladder. The tumor is a slow development yet it is contagious to the other parts of the body, such as it does affect the pelvic bones, lungs, liver, and the lower vertebrae (Zenka, 2009).
In this day and age anyone can write anything and put it on the internet for everyone to read. You have to be diligent in separating fact from fiction. If you are skeptical you may have to do your own research to see where the information originated. Do not believe everything you read just because it states it was from a study as it may not be reliable or truthful. Both of these studies had interesting information, however since they both were lacking sufficient data it was hard to determine if the studies were completely honest and adequate or not.
Over the years, the fight against ovarian cancer has proven to be even more difficult due to the cancer being asymptomatic at its early stages. For this reason, there are constantly late diagnoses made on women who unfortunately develop this cancer (Stack).... ... middle of paper ... ...
A patient known as Mr. Wright was diagnosed with terminal lymphoma, which effected various parts of his body. Doctors were fighting to help keep him alive for as long as they could, however, when they were left with no other options they tried giving him a dose of a new cancer drug called “Krebiozen”. They remained very skeptical of the new drug and its effectiveness, however Mr. Wright believed that it would cure his cancer. Three days after his first treatment, he gained the strength to get out of bed after months of being lifeless. After ten days, he was well enough to go home and his cancer was noticeably diminishing. Krebiozen was recognized as an anti-cancer drug by many physicians in the 1950’s, and it was claimed that in one study,
...rm (1:1) was added to the linearized sample in a 1.5 ml microcentrifuged tube. The mixtures were centrifuged at 13000 rpm for 2 minutes at room temperature. The upper aqueous solution was transferred to another sterile 1.5 ml microcentrifuged tube. Equal volume of chloroform was added and centrifuged at 13000 rpm for 5 minutes. Again, the aqueous solution was transferred to a new 1.5 ml microcentrifuged tube and 1/10 volume of 3M Sodium Acetate Solution was added. Then, 2.5 volumes of cold absoluted ethanol were added to precipitate the DNA. The mixture was incubated in -20 °C for overnight or -80 °C for 1-2 hour.
Cancer develops when cells in a part of the body begin to grow out of
However, they are identified in people with colon cancer. The most abundant bacteria in our gut and causing cancer are Proteobacteria, Firmicutes and Bacteroidetes. When colon tumor genes are analyzing, alterations in these genes are founded. APC and CTNNB1, P53 genes have deletions in people with colon cancer. In addition, DNA methylation at CpG islands are abnormal, and chromosomes are instable. All these DNA alterations mentioned due colon cancer are mentioned to occur in the stem cells in the base of the villus crypt. The crypt is occupied by a numerous of differentiated cells, which renew to generate epithelium after an injury. Bacteria induced DNA alteration, E. Coli downregulate DNA mismatch repair protein, so this mechanism enhance tumor formation. In the case of, Enteroccous faecalis produce aneuploidy in the epithelial cells, aneuploidy is an abnormal number of chromosomes in a cell. Overall, there are many factors undelaying colon cancer that need to be studied. However, formation of cancer in the colon can take place due to reduction of protective bacteria, changes in energy uptake and metabolic disorders. For future considerations, it is important to understand the place that take the
A transcription factor can be converted from active to inactive form (and vice versa) through either a ligand dependent or independent method. A ligand independent activation of transcription factors can happen through phosphorylation by a kinase protein. For example, estrogen receptor is inactivated through phosphorylation of serine 236 by Protein Kinase A (20). S236 lies within the DNA binding domain of ER, which is also important for functional heterodimerization of ERα and ERβ. It was observed that overexpression of PKA inhibited ER activity in the absence of ligand. An immunoprecipitation assay revealed that phosphorylation of S236 prevented heterdimerization. This helped conclude that phosphorylation of S236 by PKA regulates ER activity. Another way a transcription factor can be activated is through binding of a specific ligand. This ligand is termed an agonist or antagonist depending on whether it is resulting in activation or inactivation of the gene being regulated. For example, ER is activated upon binding of 17β estradiol (21). Crystallographic analysis showed a conformational change that occurs upon binding of estradiol, which stabilizes the ligand binding domain. FRET analysis revealed that this agonist binding promotes heterodimerization and subsequent activation of ER
Bladder cancer has been found in about 200,000 to 3,000,000 people per year. Bladder cancer occurs in the bladder of mainly older people. The bladder is a membranous sac in humans or other animals, where urine is taken in to be released. During bladder cancer, the cancer cells build up in the inside of the bladder. Cancer cells are cells that don’t respond normally to the cell cycle control system, making them reproduce rapidly. I would be interested in curing this cancer because the cancer is very common and can be very painful. Also, my grandfather had bladder cancer and was in a lot of pain, and once he was cured he felt a lot better. This makes me want to help everyone with this type of cancer so they are no longer in pain.
Methylation patterns changes during embryonic development to allow silencing of genes which had their jobs finished and allow the activation of genes that are required for further differentiation. Adult human cells, for example, are silenced by the methylation of complete set of genes that allow cells to maintain unlimited differentiation capacity that characterizes embryonic stem cells, so understanding this underlies the creation of iPSCs (induced pluripotent stem cells) which are now in clinical use to treat diseases and discover specific drug. All tumors that have ever been examined show change in DNA methylation. Cedar has shown that cancer cells have targeted methylation of CG Islands which control transcription of tumor suppressor genes, methylation silences these genes and allows the cancer cells to proliferate, so this observation should help in the development of new approaches for targeting, thereby, preventing the fundamental pathology of
HPVs are now identified as the etiological factors in nearly all types of cervical intraepithelial neoplasia (CIN) and invasive cancer of the cervix. In fact, based on laboratory, clinical, and epidemiological evidence HPVs have been recognized as the ‘necessary cause’ of cervical cancer that is cancer of the cervix will not develop in the absence of persistent HPV infection.10 The relationship is stronger than that between cancer of the lung and cigarette smoking; but, the progression of cancer of the cervix from HPV infection is not inevitable. Studies have shown that only 100 000 or 10% of every one million women who are infected, progress to cervical dysplasia (that is pre-cancerous changes in cervical epithelial cells). Out of these,
Although I am a political science major and I do not have a passionate desire for biology. I however, see how it impacts my day to day activity. In my early adolescence, my mother was diagnosed with breast cancer. This diseased not only affected her but myself as well. Therefore, I understand the severity of research for cancer. As I carefully research for this paper, I see how many scientists are involved